UW NSEC
Thrust One
E. W. Edwards, J. J. de Pablo, P. F. Nealey, M. P. Stoykovich, and H. H. Solak, "Long-range order and orientation of cylinder-forming block copolymers on chemically nanopatterned striped surfaces," Macromolecules, 39(10), 3598-3607, 2006.
E. W. Edwards, M. P. Stoykovich,, P. F. Nealey, and H. H. Solak, "Binary blends of diblock copolymers as an effective route to multiple length scales in perfect directed self-assembly of diblock copolymer thin films," Journal of Vacuum Science & Technology B, 24(1), 340-344, 2006.
R. J. Hamers, J. D. Beck, M. A. Eriksson, B. Li, M. S. Marcus, J. Simmons, and J. Streifer, "Electrically directed assembly and detection of nanowire bridges in aqueous media," Nanotechnology, 17(11), 280-286, 2006.
A. L. Schmitt, M. J. Bierman, D. Schmeisser, F. J. Himpsel, and S. Jin, "Synthesis and properties of single-crystal FeSi nanowires," Nano Letters, 6(8), 1617-1621, 2006.
R. J. Hamers, J. M. Simmons, B. M. Nichols, M. S. Marcus, M. A. Eriksson, O. M. Castellini, and C. S. Lee, "Effect of ozone oxidation on single-walled carbon nanotubes," Journal of Physical Chemistry B, 110(14), 7113-7118, 2006.
A. L. Schmitt, L. Zhu, D. Schmeisser, F. J. Himpsel, and S. Jin, "Metallic single-crystal CoSi nanowires via chemical vapor deposition of single-source precursor," Journal of Physical Chemistry B, 110(37), 18142-18146, 2006.
K. Daoulas, J. J. de Pablo, and P. F. Nealey, "Morphology of multi-component polymer systems: Single chain in mean field simulation studies," Soft Matter, 2(7), 573-583, 2006.
F. Zheng, J. L. McChesney, X. Liu, and F. J. Himpsel, "Orientation of fluorophenols on Si(111) by near edge x-ray absorption fine structure spectroscopy," Physical Review B, 73, 205315, 2006.
I. In, Y. H. La, S. M. Park, P. F. Nealey, and P. Gopalan, "Side-chain grafted random copolymer brushes as neutral surfaces for controlling the orientation of block copolymer microdomains in thin films," Langmuir, 22(18), 7855-7860, 2006.
M. S. Marcus, J. M. Simmons, O. M. Castellini, M. A. Eriksson, and R. J. Hamers, "Photogating carbon nanotube transistors," Journal of Applied Physics, 100, 84306, 2006.
K. C. Daoulas, J. J. de Pablo, M. Muller, M. P. Stoykovich, S. M. Park, G. J. Papakonstantopoulos, P. F. Nealey, and H. H. Solak, "Fabrication of complex three-dimensional nanostructures from self-assembling block copolymer materials on two-dimensional chemically patterned temp...," Physical Review Letters, 96, 36104, 2006.
P. F. Nealey, E. W. Edwards, M. Muller, M. P. Stoykovich, H. H. Solak, and J. J. de Pablo, "Self-assembling resists for nanolithography," Proceedings of the 2005 IEEE International Electron Devices Meeting, 356-359, 2006.
J. M. Simmons, B. M. Nichols, M. S. Marcus, O. M. Castellini, C. S. Lee, R. J. Hamers, and M. A. Eriksson, "Critical oxide thickness for efficient single-walled carbon nanotube growth on silicon using thin SiO2 diffusion barriers," Small, 2(7), 902-907, 2006.
M. P. Stoykovich, and P. F. Nealey, "Block copolymers and conventional lithography," Materials Today, 9(9), 20-29, 2006.
M. P. Stoykovich, E. W. Edwards, H. H. Solak, and P. F. Nealey, "Phase behavior of symmetric ternary block copolymer-homopolymer blends in thin films and on chemically patterned surfaces," Physical Review Letters, 97, 147802, 2006.
S. O. Kim, B. H. Kim, K. Kim, C. M. Koo, M. P. Stoykovich, P. F. Nealey, and H. H. Solak, "Defect structure in thin films of a lamellar block copolymer self-assembled on neutral homogeneous and chemically nanopatterned surfaces," Macromolecules, 39(16), 5466-5470, 2006.
K. C. Daoulas, M. Muller, M. P. Stoykovich, Y. J. Papakonstantopoulos, J. J. de Pablo, P. F. Nealey, S. M. Park, and H. H. Solak, "Directed assembly of copolymer materials on patterned substrates: Balance of simple symmetries in complex structures," Journal of Polymer Science Part B: Polymer Physics, 44(18), 2589-2604, 2006.
J. H. Park, A. A. Khandekar, S. M. Park, L. J. Mawst, T. J. Kuech, and P. F. Nealey, "Selective MOCVD growth of single-crystal dense GaAs quantum dot array using cylinder-forming diblock copolymers," Journal of Crystal Growth, 297(2), 283-288, 2006.
G. J. Papakonstantopoulos, J. J. de Pablo, K. Yoshimoto, M. Doxastakis, and P. F. Nealey, "Local mechanical properties of polymeric nanocomposites," Physical Review E, 72, 31801, 2005.
M. P. Stoykovich, J. J. de Pablo, M. Muller , S. O. Kim, H. H. Solak, E. W. Edwards, and P. F. Nealey, "Directed assembly of block copolymer blends into nonregular device-oriented structures," Science, 308(5727), 1442-1446, 2005.
S. G. Xiao, X. Yang, E. W. Edwards, T. G. La, and P. F. Nealey, "Graphoepitaxy of cylinder-forming block copolymers for use as templates to pattern magnetic metal dot arrays," Nanotechnology, 16(7), 324-329, 2005.
Y. H. La, E. W. Edwards, S. M. Park, and P. F. Nealey, "Directed assembly of cylinder-forming block copolymer films and thermochemically induced cylinder to sphere transition: A hierarchical route to lin...," Nano Letters, 5(7), 1379-1384, 2005.
E. W. Edwards, J. J. de Pablo, M. P. Stoykovich, M. Muller, H. H. Solak, and P. F. Nealey, "Mechanism and kinetics of ordering in diblock copolymer thin films on chemically nanopatterned substrates," Journal of Polymer Science Part B: Polymer Physics, 43(23), 3444-3459, 2005.
I. Junarsa, M. P. Stoykovich, P. F. Nealey, Y. A. Ma, and F. Cerrina, "Hydrogen silsesquioxane as a high resolution negative-tone resist for extreme ultraviolet lithography," Journal of Vacuum Science & Technology B, 23(1), 138-143, 2005.
J. D. Beck, M. S. Marcus, and R. J. Hamers, "Manipulation and real-time electrical detection of individual bacterial cells at electrode junctions: A model for assembly of nanoscale biosystems," Nano Letters, 5(4), 777-781, 2005.
K. Metz, T. L. Clare, M. A. Eriksson, M. S. Marcus, and R. J. Hamers, "Electrical characterization of nanowire bridges incorporating biomolecular recognition elements," Nanotechnology, 16(12), 2846-2851, 2005.
 
Thrust Two
N. Rathore, J. J. de Pablo, and S. H. Gellman, "Thermodynamic sability of β-peptide helices and the role of cyclic residues," Biophysical Journal, 91(9), 3425-3435, 2006.
N. A. Lockwood, K. D. Cadwell, F. Caruso, and N. L. Abbott, "Formation of polyelectrolyte multilayer films and interfaces between thermotropic liquid crystals and aqueous phases," Advanced Materials, 18(7), 850-854, 2006.
J. K. Murray, and S. H. Gellman, "Microwave-assisted parallel synthesis of a 14-helical β-peptide library," Journal of Combinatorial Chemistry, 8(1), 58-65, 2006.
W. Pomerantz, N. L. Abbott, and S. H. Gellman, "Lyotropic liquid crystals from designed helical β-peptides," Journal of the American Chemical Society, 128(27), 8730-8731, 2006.
W. Pomerantz, B. Weisblum, S. H. Gellman, and S. H. Palecek, "Antifungal activity from 14-helical β-peptides," Journal of the American Chemical Society Communications, 128(39), 12630-12631, 2006.
 
Thrust Three
N. Rathore, J. J. de Pablo, and T. A. Knotts, "Confinement effects on the thermodynamics of protein folding: Monte Carlo simulations," Biophysical Journal, 90(5), 1767-1773, 2006.
J. P. Hernandez, H. Ma, J. J. de Pablo, and M. D. Graham, "Cross-stream line migration in confined flowing polymer solutions: theory and simulation," Physics of Fluids, 18, 123101, 2006.
J. P. Hernandez, J. J. de Pablo, and M. D. Graham, "N log N method for hydrodynamic interactions of confined polymer systems: Brownian dynamics," Journal of Chemical Physics, 125, 164906, 2006.
R. Khare, M. D. Graham, and J. J. de Pablo, "Cross-stream migration of flexible molecules in a nanochannel," Physical Review Letters, 96, 224505, 2006.
F. R. Hung, O. Guzman, B. T. Gettelfinger, N. L. Abbott, and J. J. de Pablo, "Anisotropic nanoparticles immersed in a nematic liquid crystal: defect structures and potentials of mean force," Physical Review E, 74, 11700, 2006.
C. G. Stoltz, J. J. de Pablo, and M. D. Graham, "Concentration dependence of shear and extensional rheology of polymer solutions: Brownian dynamics simulations," Journal of Rheology, 50(2), 137-167, 2006.
E. Tjipto, K. D. Cadwell, J. F. Quinn, A. P. Johnston, N. L. Abbott, and F. Caruso, "Tailoring the interfaces between nematic liquid crystal emulsions and aqueous phases via layer-by-layer assembly," Nano Letters, 6(10), 2243-2248, 2006.
A. Valouev, D. C. Schwartz, S. Zhou, and M. S. Waterman, "An algorithm for assembly of ordered restrictions maps from single DNA moleucles," Proceedings of the National academy of Sciences, USA, 103, 15770-15775, 2006.
M. C. Zody, M. Garber, and D. J. Adams, et al, "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage," Nature, 440(7087), 1045-1049, 2006.
A. Valouev, Y. Zhang, D. C. Schwartz, and M. S. Waterman, "Refinement of optical map assemblies," Bioinformatics, 22(10), 1217-1224, 2006.
B. H. Clare, L. Effimenko, D. A. Fischer, J. Genzer, and N. L. Abbott, "Gradients orientations of liquid crystals in contact with surfaces that present continuous gradients of chemical functionality," Chemistry of Materials, 18(9), 2357-2363, 2006.
H. B. Ma, and M. D. Graham, "Theory of shear-induced migration in dilute polymer solutions near solid boundaries," Physics of Fluids, 17, 83103, 2005.
Y. L. Chen, M. D. Graham, J. J. de Pablo, K. Jo, and D. C. Schwartz, "DNA molecules in microfluidic oscillatory flow," Macromolecules, 38(15), 6680-6687, 2005.
J. P. Hernandez, C. G. Stoltz, and M. D. Graham, "Transport and collective dynamics in suspensions of confined swimming particles," Physical Review Letters, 95, 204501, 2005.
A. Ramanathan, L. Pape, and D. C. Schwartz, "High-density polymerase-mediated incorporation of fluorochrome-labeled nucleotides," Analytical Biochemistry, 337(1), 1-11, 2005.
K. Jo, E. Dimalanta, Y. L. Chen, R. Runnheim, H. B. Ma, M. D. Graham, J. J. de Pablo, S. N. Coppersmith, and D. C. Schwartz, "Fluid arrays: Shear induced migration of single DNA molecules in confined environments," Biophysical Journal, 88(1), 658, 2005.
T. A. Knotts, N. Rathore, and J. J. de Pablo, "Structure and stability of a model three-helix-bundle protein on tailored surfaces," Proteins - Structure, Function and Bioinformatics, 61, 385-397, 2005.
A. Kile, T. Anantharaman, P. Myler, C. Vogt, A. Ivens, K. Stuart, and D. C. Schwartz, "Shotgun optical mapping of the entire Leishmania major Friedlin genome," Molecular and Biochemical Parasitology, 138(1), 97-106, 2004.
A. Kile, et al, "Single-molecule approach to bacterial genomic comparisons via optical mapping," Journal of Bacteriology, 186(22), 7773-7782, 2004.
E. V. Ambrust, J. A. Berges, and C. Bowler, et al, "The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism," Science, 306(5693), 79-86, 2004.
Y. L. Chen, M. D. Graham, J. J. de Pablo, and P. Doyle, "Conformation and dynamics of single DNA molecues in parallel-plate slit microchannels," Physical Review E, 70, 60901, 2004.
 
Thrust Four
M. Powell, and M. Kanarek, "Nanomaterial health effects- part 1: Background and current knowledge," Wisconsin Medical Journal, 105(2), 16-20, 2006.
C. Tahan, R. Leung, G. M. Zenner, K. D. Ellison, W. C. Crone, and C. A. Miller, "Nanotechnology and society: A discussion-based undergraduate course," American Journal of Physics, 74(4), 2006.
M. Powell, and M. Kanarek, "Nanomaterial health effects- part 2: Uncertainties and recommendations for the future," Wisconsin Medical Journal, 105(3), 18-23, 2006.
C. Miller, and S. Pfatteicher , "Nanotechnology in society education: Cultivating the mental habits of social engineers and critical citizens," Nanoscale Science and Engineering Education: Issues Trends and Future Directions; A. Sweeney & S. Sudipta eds.: American Pacific Publishers, 2006.
 
Seeds
J. H. Park, A. A. Khandekar, S. M. Park, L. J. Mawst, T. F. Kuech, and P. F. Nealey, "Selective growth and characterization of GaAs quantum dots on patterned substrate by utilizing diblock coploymer template," TMS Electronic Materials Conference, PA, 2006.
 
Education
J. Moore, "Global leadership in science and technology," Journal of Chemical Education, 82, 807, 2005.
 
Facilities
K. E. Gonsalves, M. Thiyagarajan, J. H. Choi, P. Zimmerman, F. Cerrina, P. F. Nealey, V. Golovkina, J. Wallace, and N. Batina, "High performance resist for EUV lithography," Microelectronic Engineering, 77(1), 27-35, 2005.